AccessClinicalData is a NIAID supported IID repository that includes clinical trials data.

AccessClinicalData@NIAID is a NIAID cloud-based, secure data platform that enables sharing of and access to reports and data sets from NIAID COVID-19 and other sponsored clinical trials for the basic and clinical research community.

COVID-19

tuberculosis

Upper Respiratory Tract Infection

HIV infectious disease

pneumonia

Death Domain

infectious disease

drug allergy

Severe acute respiratory syndrome coronavirus 2

Severe acute respiratory syndrome coronavirus

Parallel Study

Randomized Clinical Trial

Double Blind Study

Triple Blind Study

Open Label Study

accessclinicaldata@NIAID (ACD@NIAID)

name

Homo sapiens

Infectious disease

Preclinical and clinical studies

Public health and epidemiology

Medicine

Immunology

Pharmacology

AmoebaDB is a NIAID supported IID repository that includes genomic data.

AmoebaDB is a component website of the Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB) and is constructed using the same infrastructure, data analysis, and loading procedures. VEuPathDB is is one of two bioinformatics Resource Centers (BRCs) funded by the US National Institute of Allergy and Infectious Diseases (NIAID), with additional support from the Wellcome Trust (UK).These resources stem from support initially provided for the Plasmodium Genome Database by the Burroughs Wellcome Fund (2000-2) and a research grant from NIAID (2002-6). The BRC program was initiated in 2004 to provide public access to computational platforms and analysis tools enabling collection, management, integration and mining of genomic information and other large-scale datasets relevant to infectious disease pathogens including their interaction with mammalian hosts and invertebrate vectors of disease.

AmoebaDB

SAGE ARK Portal is a NIAID supported IID repository that includes immune data.

The SAGE Arthritis and Autoimmune and Related Diseases (ARK Portal) is a public data repository that stores and shares data and research knowledge generated by a network of research teams focused on arthritis and autoimmune and related diseases. The ARK Portal is funded by the National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS), and the National Institute of Allergy and Infectious Diseases (NIAID). It is developed and maintained by Sage Bionetworks.

rheumatoid arthritis

systemic lupus erythematosus

osteoarthritis

vitiligo

dermatomyositis

cutaneous lupus erythematosus

Transcriptomics

single cell RNA-seq assay

Proteomics

multimodal

cytometry assay

CITE-seq

Feature Barcoding

sequencing assay

cytometry time of flight assay

single cell immune repertoire sequencing

Other

SAGE Arthritis and Autoimmune and Related Diseases Knowledge Portal (SAGE ARK Portal)

Genomics

Epigenomics

ATCC is an NIH supported biospecimen repository that includes IID samples.

ATCC (American Type Culture Collection) is a private, nonprofit, global biological resource center and standards organization that provides scientists with the biomaterials and resources they need to conduct critical life science research.   We support the scientific community with the world’s largest and most diverse collection of human and animal cell products, as well as molecular genomic tools, microbe products, and biological materials. We offer a host of services, including cell authentication, master and working cell bank production, cGMP commercial biorepository, and biomaterial deposit services. Through our ATCC Federal Solutions initiative, we lend our expertise to federal agencies in areas that include global health and infectious diseases, biodefense, and noncommunicable diseases.

Obesity

Norrie disease

Legionnaires' disease

hereditary sensory and autonomic neuropathy

Canine Neoplasm Stage Ia

autosomal recessive congenital ichthyosis 4B

dentinogenesis imperfecta

Alzheimer disease

bacterium B

Streptomyces coelicolor

Bacillus anthracis

Escherichia coli

insertion sequences

Mycobacteroides abscessus subsp. abscessus

Pseudomonas aeruginosa

Pseudomonas putida

Staphylococcus aureus

Streptomyces sp.

American Type Culture Collection (ATCC)

Apple juice from cider press [086]

Gambia

Human blood [6837]

Seawater outflow of aquarium, La Jolla, CA, USA

Dental plaque of baboon [1877]

USA, Bethesda

Soil at Showa Station, Antarctica

Caribbean Sea

Phaseolus vulgaris, Colombia [6698,9064]

USA, California, Westgard Pass

Vietnam; Binh Thanh

Chile

Intestine of Cyprinus carpio

Sewage air tank, USSR [5717]

Canada, Vancouver

Hamster [5874]

South America

Human skin [6118]

Peaty soil, Bibai City, Hokkaido, Japan [919]

Endometrium [2653]

Soil, Taipei, Taiwan [1796]

Mycetoma of the arm, Nigeria [4280]

USA, Alabama

Brazil; Alagoas

Abscess on buttocks [4091]

Bladder stone, Madrid, Spain [4366]

USA, Washington, Spirit Lake

United States; Michigan; Lansing

United States; Hawaii; Maui

Lake mud, China [1089]

Soil, USSR [835]

Cow feces [3862]

Soil, Japan [3483,3948]

USA, Michigan, Lansing

Germany; Hamburg

Canada, British Columbia

Soil, Rome, Italy [1243]

Armenia

Germany, Hamburg

Heart blood of fish

Soil [3399]

Soil from a bank of a duck pond at Kloster (the island of Hiddensee, Baltic Sea), Germany [4800]

Salted buffalo hide [3274]

Human clinical specimen [5052]

Germany, Elbe river

Activated sludge acclimated with sugar-containing synthetic wastewater [4078]

Frozen peas [4835]

Ghana; Tema

Human stool [1940]

Ireland; Galway

Volcanic hot spring at Pisciarelli Solfatara, Italy [3319]

Subcutaneous abscess of a cat [3131]

Beetles (Xyloterus lineatus)

Freshwater collected from the Putah Creek overflow, Davis, CA, USA [6642]

Water from the Llobregat River, Barcelona, Spain [5564]

Guangzhou CDC, Guangzhou, PR China

Canada; Nova Scotia; Conrad Beach

Eye of a patient suffering from a corneal ulcer, Sarrebourg, France [4368]

Spain, Barcelona

Genital hair nodule of a patient with white piedra [5252]

Bartholin abscess (leukemia) [2653]

Human specimens [7932]

Hungary, Danube river

UK, Downe

Garden soil, Oshima Island, Tokyo, Japan [894]

Gingival crevice

Masou (Oncorhynchus sp.) [3141]

India

Soil, Shimoueda, Wakayama Pref., Japan [1792]

Suriname

France; Grand Est; Sarrebourg

United States; Colorado; Fort Collins

Hungary; Tihany

Soil, Misaki, Kanagawa Pref., Japan [1061]

Soil, India [3543]

Distilled water, New Zealand [6862]

Marine surface and tidal waters exposed to light [7027]

Soil, Armenia

Romadur cheese, Kiel, Germany

USA, Ohio, Cincinnati

Sweden; Gustavsberg

Ear [2662]

Seaweed (Enteromorpha linza)

Sputum of a patient with pulmonary lesion [2632]

Soil, Pietermaritzburg, Natal, Union of South Africa [1064]

Beach sand, Freshfiled, Lancashire, UK [1124]

Human mouth

Salted cowhide [3274]

Czechoslovakia, Prague

Human feces [8629]

Soil, Kunming, China [2036]

Rabbit feces [2976]

Reunion

Soil, St. Joseph Co., IN, USA [731]

Pig feces [122,6034]

Sputum, Germany [5625]

Salt mine near Bad Ischl, Austria [3659]

Vacuum-packed lamb [3485]

Hydrothermal vent system of the Axial Seamount, Juan de Fuca Ridge [5651]

Calf rumen [028]

Bonthainia

Bos taurus

Arabidopsis thaliana

Rattus norvegicus

Ribes alpinum

Lampetra fluviatilis

Sus scrofa

Glycine max

Apis mellifera

BacDive is a BMBF supported IID repository that includes phenotypic data.

The Bacterial Diversity Metadatabase BacDive is the worldwide largest database for standardized bacterial phenotypic information. Its mission is to mobilize research data on strain level from internal files in culture collections (e.g. CABI, CIP, CCUG, DSMZ) as well as from primary literature and make it freely accessible. Today BacDive offers data on 93,254 bacterial and archaeal strains, including 19,313 type strains and thereby covers approx. 90% of the validly described species. Within over 600 data fields the topics taxonomy, morphology, physiology, origin, molecular data, and cultivation conditions are covered. The database offers systematic access to phenotypic data. BacDive thereby enables queries like "show me all strains that grow under certain conditions” by using the Advanced search or queries like “show me all strains isolated from a marine environment” by using the Isolation source search. With currently 15,357 API® tests for 27,634 strains, BacDive also offers the worldwide largest API® test collection, which can be queried using the API test finder tool.

Data Sources